Family GP003180


Family ID GP003180  add to my list RDF
Family name Defender against cell death family (dad)   suggest a name
Synonym(s) Dolichyl-diphosphooligosaccharide--protein glycosyltransferase, dad1/ost2 subunit
Cross-reference(s) PMID:
dad-1, A putative programmed cell death suppressor gene in rice.
9150612
Family Ontology
Close Hide
N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Defender against cell death family (dad)
GP003180 (540)
2 GP015541 (403) , GP019485 (65) , GP019906 (63) , GP115813 (3) , GP115856 (4)
3 GP040205 (403) , GP044363 (65) , GP044832 (63) , GP125885 (4) , GP128242 (3)
4 GP069673 (403) , GP073927 (65) , GP074446 (63) , GP141171 (4) , GP144443 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 540
Species Count (w/o splice) Count (w/ splice)
6 6
3 3
11 11
4 5
4 4
16 16
6 6
22 22
17 17
20 20
13 13
10 16
9 12
12 12
10 10
16 22
9 9
9 9
15 15
13 13
11 11
13 20
9 9
12 12
18 35
10 10
18 29
11 11
18 18
10 18
29 29
12 12
12 12
10 10
13 16
27 35
12 12


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
DAD/Ost2
IPR003038
DAD/Ost2 Family 11 (62) Yes
Ergtoxin
IPR012622
Ergtoxin Family 1 (1) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
540 470 (87%) 361 (67%) [48; 319; 993] ~292 2456 213