Family GP000645


Family ID GP000645  add to my list RDF
Family name Sterol desaturase family   suggest a name
Cross-reference(s) PMID:
Cloning and characterization of the WAX2 gene of Arabidopsis involved in cuticle membrane and wax production.
12724542 PMID:
The YORE-YORE gene regulates multiple aspects of epidermal cell differentiation in Arabidopsis.
12974811 PMID:
A novel male-sterile mutant of Arabidopsis thaliana, faceless pollen-1, produces pollen with a smooth surface and an acetolysis-sensitive exine.
14756310 PMID:
Isolation and characterization of an Arabidopsis thaliana cDNA encoding a Delta7-sterol-C5-desaturase by functional complementation of a defective yeast mutant.
8919915 PMID:
The Arabidopsis dwf7/ste1 mutant is defective in the Delta7 sterol C-5 desaturation step leading to brassinosteroid biosynthesis.
9927639 PMID:
Delta7-sterol-C5-desaturase: molecular characterization and functional expression of wild-type and mutant alleles.
10344195 PMID:
Role of highly conserved residues in the reaction catalyzed by recombinant Delta7-sterol-C5(6)-desaturase studied by site-directed mutagenesis.
10651635 PMID:
Deuterated Delta7-cholestenol analogues as mechanistic probes for wild-type and mutated Delta7-sterol-C5(6)-desaturase.
11141078
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Sterol desaturase family (plant-specificity: 9%)
GP000645 (533)
2
Putative C-4 sterol methyl oxidase family
GP016267 (212) ,
Sphingolipid Hydroxylase family
GP016396 (188) ,
Putative sterol-C5-desaturase family (plant-specificity: 22%)
GP018999 (86) ,
(plant-specificity: 72%)
GP109367 (45)
3 GP040896 (212) , GP041018 (184) , GP043790 (86) ,
(plant-specificity: 79%)
GP119179 (43) , GP126052 (4)
4 GP070419 (184) , GP072027 (110) , GP071860 (100) , GP073307 (81) ,
(plant-specificity: 79%)
GP075962 (43) , GP139184 (5) , GP141399 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 533
Species Count (w/o splice) Count (w/ splice)
4 4
5 5
18 18
7 7
6 6
10 10
5 5
26 26
25 25
25 25
19 19
11 15
15 15
14 14
11 11
18 26
20 20
9 9
14 14
13 13
9 9
10 16
7 7
12 12
15 34
13 13
12 27
6 6
13 13
6 9
22 22
8 8
17 18
6 6
8 11
16 26
9 9


Information to display




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No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Fatty acid hydroxylase
IPR006694
Fatty acid hydroxylase Domain 79 (422) No

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Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006694


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
533 464 (87%) 419 (79%) [41; 261; 1381] ~251 2246 111




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