Family GP000506


Family ID GP000506  add to my list RDF
Family name Rop guanine nucleotide exchange factor family   suggest a name
Synonym(s) Rop nucleotide exchanger, prone
Cross-reference(s) PMID:
A new family of RhoGEFs activates the Rop molecular switch in plants.
15980860 PMID:
Members of a novel class of Arabidopsis Rho guanine nucleotide exchange factors control Rho GTPase-dependent polar growth.
16415208
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Rop guanine nucleotide exchange factor family (plant-specificity: 9%)
GP000506 (524)
2 GP015405 (515) , GP114263 (4) , GP116253 (3)
3 GP040074 (515) , GP126050 (4) , GP129002 (3)
4 GP069561 (515) , GP141396 (4) , GP145619 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 524
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
6 6
4 4
15 15
14 14
17 17
14 14
15 15
11 11
12 18
10 11
11 11
14 14
16 29
11 11
10 10
13 13
12 12
7 7
14 15
7 7
9 9
17 51
8 8
14 26
10 10
12 12
9 11
21 21
17 17
15 16
13 13
13 17
26 43
12 12


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
PRONE domain
IPR005512
PRONE domain Domain 95 (499) No

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Clustering
 



Close Representative InterPro domains - Consensus schema
IPR005512


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
524 433 (83%) 384 (73%) [56; 524; 1328] ~488 3220 334




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