Family GP000355


Family ID GP000355  add to my list RDF
Family name Auxin efflux carrier family   suggest a name
Cross-reference(s) PMID:
PIN and AUX/LAX proteins: their role in auxin accumulation.
15564124 PMID:
Auxin transport.
16054428
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Auxin efflux carrier family
GP000355 (476)
2 GP015273 (474)
3 GP040583 (472)
4 GP070026 (320) ,
(plant-specificity: 9%)
GP132349 (81) ,
(plant-specificity: 11%)
GP132388 (71)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 476
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
7 9
5 5
10 10
4 4
11 11
10 10
12 12
10 10
6 10
8 15
6 6
8 8
10 13
8 9
9 9
8 8
8 8
14 14
7 11
6 6
37 37
12 34
16 16
16 47
8 8
10 10
6 9
14 14
14 14
17 20
10 10
11 14
21 41
10 10


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Auxin efflux carrier
IPR004776
Auxin efflux carrier Family 88 (418) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004776


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
476 373 (78%) 313 (66%) [39; 409; 1000] ~365 3248 295