Family GP000583


Family ID GP000583  add to my list RDF
Family name Signal recognition particle 54 kda family   suggest a name
Synonym(s) Srp54
Family Ontology
Close Hide
cellular_component
signal recognition particle receptor complex
GO:0005785 (17%) - signal recognition particle receptor complex
signal recognition particle
GO:0048500 (21%) - signal recognition particle
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Signal recognition particle 54 kda family (plant-specificity: 9%)
GP000583 (463)
2 GP016467 (192) , GP018248 (110) , GP018684 (88) , GP020574 (73)
3
Signal recognition particle, subunit SRP54 subfamily
GP042305 (114) , GP042951 (110) , GP043436 (88) ,
(plant-specificity: 9%)
GP118926 (78) ,
Cell division transporter substrate-binding protein FtsY subfamily
GP045151 (73)
4 GP071744 (114) , GP072456 (109) , GP072944 (86) ,
(plant-specificity: 9%)
GP132355 (78) , GP074779 (73)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 463
Species Count (w/o splice) Count (w/ splice)
5 5
6 6
33 33
9 12
11 11
27 27
8 8
12 12
10 10
13 13
11 11
7 13
11 12
7 7
9 9
8 16
10 10
6 6
6 6
7 7
5 5
9 11
5 5
19 19
10 26
5 5
12 28
11 11
11 11
5 5
25 25
13 13
12 15
8 8
9 10
19 23
9 9


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Signal-recognition particle receptor FtsY
IPR004390
Signal-recognition particle receptor FtsY Family 9 (40) Yes
Signal recognition particle protein Ffh
IPR004780
Signal recognition particle protein Ffh Family 10 (46) Yes
Signal recognition particle, SRP54 subunit, eukaryotic
IPR006325
Signal recognition particle, SRP54 subunit, eukaryotic Family 14 (63) Yes
Signal recognition particle, SRP54 subunit
IPR022941
Signal recognition particle, SRP54 subunit Family 21 (96) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Signal recognition particle, SRP54 subunit, GTPase domain
IPR000897
Signal recognition particle, SRP54 subunit, GTPase domain Domain 68 (316) No
Signal recognition particle, SRP54 subunit, helical bundle
IPR013822
Signal recognition particle, SRP54 subunit, helical bundle Domain 58 (270) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
AAA+ ATPase domain
IPR003593 IPR013822 IPR000897



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
463 403 (87%) 326 (70%) [51; 480; 1549] ~425 3548 155