Family GP003066


Family ID GP003066  add to my list RDF
Family name Atpase, f1 complex, epsilon subunit, mitochondrial family   suggest a name
Cross-reference(s) PMID:
The evolution of A-, F-, and V-type ATP synthases and ATPases: reversals in function and changes in the H+/ATP coupling ratio.
15473999 PMID:
Mechanisms of ATPases--a multi-disciplinary approach.
15078220
Comment warning, probably members of a superfamily (atpase) according ipr
Family Ontology
Close Hide
molecular_function
binding
GO:0005488 (12%) - binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Atpase, f1 complex, epsilon subunit, mitochondrial family (plant-specificity: 19%)
GP003066 (456)
2 GP016791 (122) ,
(plant-specificity: 60%)
GP020241 (99) , GP019542 (84) ,
(plant-specificity: 60%)
GP109171 (66) ,
(plant-specificity: 19%)
GP019309 (63) ,
(plant-specificity: 100%)
GP030714 (17) ,
(plant-specificity: 100%)
GP025514 (8) ,
(plant-specificity: 100%)
GP112548 (5) , GP117396 (3) , GP031015 (3)
3 GP041431 (122) ,
(plant-specificity: 50%)
GP045212 (99) , GP044789 (84) ,
(plant-specificity: 60%)
GP118966 (66) , GP044154 (63) ,
(plant-specificity: 100%)
GP050936 (14) ,
(plant-specificity: 100%)
GP052460 (8) , GP130567 (3) , GP058720 (3) , GP132052 (3)
4
(plant-specificity: 9%)
GP076015 (118) , GP074832 (99) , GP074396 (84) ,
(plant-specificity: 60%)
GP132405 (66) , GP073685 (63) ,
(plant-specificity: 100%)
GP084973 (13) , GP091108 (4) , GP147655 (3) , GP091475 (3) , GP149435 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 456
Species Count (w/o splice) Count (w/ splice)
5 5
6 6
24 24
9 10
5 5
23 23
8
11 11
10 10
11 11
8 8
10 14
5 6
8 8
6 6
9 15
8 9
7 7
16 16
37 37
7 7
6 6
8 8
23 23
7 23
7 7
7 25
6 6
9 9
7 9
19 19
15 15
19 19
6 6
6 10
14 19
6 6


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
ATPase, F1 complex, epsilon subunit, mitochondrial
IPR006721
ATPase, F1 complex, epsilon subunit, mitochondrial Family 13 (61) Yes
DNA mismatch repair protein, MutL
IPR020667
DNA mismatch repair protein, MutL Family 1 (1) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
456 397 (87%) 226 (50%) [39; 366; 2307] ~449 4758 103