Family GP004083


Family ID GP004083  add to my list RDF
Family name Bacterial fmu (sun)/eukaryotic nucleolar nol1/nop2p family   suggest a name
Cross-reference(s) PMID:
Yeast NOP2 encodes an essential nucleolar protein with homology to a human proliferation marker.
7806561 PMID:
Nop2p is required for pre-rRNA processing and 60S ribosome subunit synthesis in yeast.
8972218
Family Ontology
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molecular_function
tRNA (cytosine-5-)-methyltransferase activity
GO:0016428 (18%) - tRNA (cytosine-5-)-methyltransferase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Bacterial fmu (sun)/eukaryotic nucleolar nol1/nop2p family
GP004083 (424)
2 GP018197 (127) ,
(plant-specificity: 9%)
GP109150 (69) , GP021610 (59) ,
(plant-specificity: 40%)
GP109262 (56) , GP021971 (54) ,
(plant-specificity: 22%)
GP021126 (52) , GP027654 (4) , GP026848 (3)
3 GP042890 (127) , GP043344 (67) ,
(plant-specificity: 9%)
GP046708 (59) ,
(plant-specificity: 40%)
GP119040 (56) , GP047125 (54) ,
(plant-specificity: 22%)
GP046182 (52) , GP054358 (4) , GP053348 (3)
4 GP072393 (126) , GP132403 (67) , GP076478 (59) , GP076539 (56) , GP076955 (54) ,
(plant-specificity: 22%)
GP075865 (52) , GP085909 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 424
Species Count (w/o splice) Count (w/ splice)
4 4
9 9
30 30
6 6
11 11
23 23
7 7
7 7
6 6
13 13
9 9
8 12
10 12
7 7
7 7
8 18
7 7
7 7
6 6
8 8
7 7
9 13
6 6
24 24
7 22
6 6
9 24
6 6
7 7
5 7
20 20
16 16
12 12
11 11
7 7
17 20
7 7


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
rRNA small subunit methyltransferase B
IPR004573
rRNA small subunit methyltransferase B Family 4 (17) Yes
RNA (C5-cytosine) methyltransferase
IPR023267
RNA (C5-cytosine) methyltransferase Family 71 (302) No
RNA (C5-cytosine) methyltransferase, putative Rsm-related, plant
IPR023268
RNA (C5-cytosine) methyltransferase, putative Rsm-related, plant Family 10 (42) Yes
RNA (C5-cytosine) methyltransferase, subfamily 9
IPR023269
RNA (C5-cytosine) methyltransferase, subfamily 9 Family 10 (42) Yes
tRNA (C5-cytosine) methyltransferase, NCL1
IPR023270
tRNA (C5-cytosine) methyltransferase, NCL1 Family 18 (75) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p
IPR001678
Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p Domain 79 (337) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR023267 IPR001678


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Species
Information to display
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(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
424 368 (87%) 274 (65%) [43; 507; 1209] ~487 3508 163