Family GP001515


Family ID GP001515  add to my list RDF
Family name Expressed or hypothetical protein group   suggest a name
Family Ontology
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molecular_function
methionyl-tRNA formyltransferase activity
GO:0004479 (7%) - methionyl-tRNA formyltransferase activity
formyltetrahydrofolate deformylase activity
GO:0008864 (20%) - formyltetrahydrofolate deformylase activity
biological_process
conversion of methionyl-tRNA to N-formyl-methionyl-tRNA
GO:0071951 (7%) - conversion of methionyl-tRNA to N-formyl-methionyl-tRNA
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Expressed or hypothetical protein group (plant-specificity: 60%)
GP001515 (417)
2 GP016223 (191) ,
Formyltetrahydrofolate deformylase family (plant-specificity: 9%)
GP019273 (94) ,
Phosphoribosylglycinamide formyltransferase family (plant-specificity: 9%)
GP020457 (67) ,
(plant-specificity: 9%)
GP020517 (65)
3 GP040857 (191) ,
(plant-specificity: 9%)
GP044116 (94) ,
(plant-specificity: 9%)
GP045455 (67) ,
(plant-specificity: 9%)
GP045517 (65)
4 GP070718 (191) , GP073647 (94) , GP075087 (67) , GP075148 (65)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 417
Species Count (w/o splice) Count (w/ splice)
2 2
5 5
24 24
8 9
5 5
15 15
7 7
13 13
11 11
9 9
8 8
9 16
8 9
9 9
7 7
9 11
7 7
10 10
7 7
8 8
8 8
8 9
7 7
28 28
8 20
6 6
8 31
8 8
10 10
6 8
13 13
7 7
12 14
10 10
9 15
15 19
12 12


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Formyltetrahydrofolate deformylase
IPR004810
Formyltetrahydrofolate deformylase Family 20 (85) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
417 356 (85%) 256 (61%) [65; 356; 1689] ~405 5505 160