Family GP000713


Family ID GP000713  add to my list RDF
Family name alcohol oxidase family   suggest a name
Synonym(s) Glucose-methanol-choline oxidoreductase, glucose-methanol-choline oxidoreductase mandelonitrile lyase, mandelonitrile lyase
Cross-reference(s) PMID:
Isolation and characterization of the Arabidopsis organ fusion gene HOTHEAD.
12904212 PMID:
GMC oxidoreductases. A newly defined family of homologous proteins with diverse catalytic activities.
1542121
Family Ontology
Close Hide
molecular_function
binding
GO:0005488 (1%) - binding
choline dehydrogenase activity
GO:0008812 (61%) - choline dehydrogenase activity
biological_process
alcohol metabolic process
GO:0006066 (61%) - alcohol metabolic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
alcohol oxidase family
GP000713 (397)
2 GP015593 (395)
3 GP040268 (395)
4 GP069724 (395)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 397
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
6 6
21 21
51 51
10 10
8 8
8 8
7 7
5 5
8 8
7 9
8 8
7 7
5 7
7 7
5 5
4 4
6 6
6 6
8 10
6 6
15 15
9 25
9 9
10 20
6 6
6 6
15 16
39 39
12 12
14 14
7 7
6 6
15 15
6 6


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Glucose-methanol-choline oxidoreductase
IPR012132
Glucose-methanol-choline oxidoreductase Family 61 (242) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Glucose-methanol-choline oxidoreductase, N-terminal
IPR000172
Glucose-methanol-choline oxidoreductase, N-terminal Domain 84 (334) No
Glucose-methanol-choline oxidoreductase, C-terminal
IPR007867
Glucose-methanol-choline oxidoreductase, C-terminal Domain 78 (308) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR007867 IPR000172 IPR012132


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
397 364 (92%) 288 (73%) [63; 537; 1643] ~460 4001 405