Family GP007137

Family ID GP007137  add to my list RDF
Family name Defensin-like protein group   suggest a name
Curation status ?
Found in Arabidopsis thaliana plant-specific
Phylogenetic analyzes Phylogeny done

Clustering level Family ID (number of sequences)
Defensin-like protein group (plant-specificity: 100%)
GP007137 (8)
(plant-specificity: 100%)
GP027584 (8)
(plant-specificity: 100%)
GP054199 (6)
(plant-specificity: 100%)
GP085619 (6)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.

  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.

Sequence total: 8
Species Count (w/o splice) Count (w/ splice)
6 8

Information to display

(click on chart bars above to get species proteins)

Close InterPro family
IPR Annotation Type % Occurence Specificity
Low-molecular-weight cysteine-rich family
Low-molecular-weight cysteine-rich family Family 100 (8) No
Defensin-like protein, Arabidopsis
Defensin-like protein, Arabidopsis Family 100 (8) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)

Close Domain architecture

Close Representative InterPro domains - Consensus schema
IPR022618 IPR020191

Build your own display:   ?

Information to display

(click on the button above to get your protein list)

[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:

Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
8 6 (75%) 6 (75%) [86; 92; 188] ~102 192 66

Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
8 6 (75%) 0.73965 0.739404 0.126213

for (default: all):

(click on the button above to get your homolog prediction list)