Family GP000750


Family ID GP000750  add to my list RDF
Family name Alcohol-forming fatty acyl-coenzyme a reductase family   suggest a name
Synonym(s) Male sterility
Cross-reference(s) PMID:
Transposon tagging of a male sterility gene in Arabidopsis.
8390620
Family Ontology
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molecular_function
fatty-acyl-CoA reductase (alcohol-forming) activity
GO:0080019 (66%) - fatty-acyl-CoA reductase (alcohol-forming) activity
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Alcohol-forming fatty acyl-coenzyme a reductase family
GP000750 (386)
2 GP015654 (386)
3 GP040311 (386)
4 GP069764 (386)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 386
Species Count (w/o splice) Count (w/ splice)
1 1
5 5
2 2
36 36
3 3
7 7
5 5
3 3
2 2
13 15
6 8
8 8
14 14
6 14
13 13
5 5
16 16
10 10
9 9
9 10
9 9
13 13
6 12
15 15
12 27
9 9
7 7
7 7
20 20
12 12
23 23
8 8
8 10
13 19
9 9


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Fatty acyl-CoA reductase
IPR026055
Fatty acyl-CoA reductase Family 66 (256) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Male sterility, NAD-binding
IPR013120
Male sterility, NAD-binding Domain 85 (330) No
NAD(P)-binding domain
IPR016040
NAD(P)-binding domain Domain 83 (319) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR016040 IPR013120 IPR026055


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
386 344 (89%) 240 (62%) [34; 426; 824] ~376 1632 377