Family GP000606


Family ID GP000606  add to my list RDF
Family name Pheophorbide a oxygenase superfamily   suggest a name
Family Ontology
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molecular_function
chlorophyllide a oxygenase [overall] activity
GO:0010277 (70%) - chlorophyllide a oxygenase [overall] activity
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Pheophorbide a oxygenase superfamily
GP000606 (374)
2
Lethal leaf-spot 1 homolog family
GP015766 (243) , GP017733 (130)
3 GP040591 (196) , GP042413 (121) , GP046464 (47) ,
(plant-specificity: 76%)
GP121718 (9) , GP062927 (2)
4 GP070939 (141) , GP071857 (121) , GP132536 (48) , GP076175 (47) , GP133935 (14) ,
(plant-specificity: 76%)
GP135488 (9)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 374
Species Count (w/o splice) Count (w/ splice)
11 11
53 53
8 9
3 3
8 8
5 5
6 6
6 6
8 8
12 12
9 12
4 4
5 5
8 8
6 15
5 5
5 5
6 6
11 11
9 9
4 7
5 5
18 18
7 11
5 5
13 32
10 10
10 10
9 10
15 15
12 12
9 9
4 4
5 5
12 15
5 5


Information to display




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Close InterPro family

No IPR family


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IPR Annotation Type % Occurence Specificity
Pheophorbide a oxygenase
IPR013626
Pheophorbide a oxygenase Domain 70 (260) No
Rieske [2Fe-2S] iron-sulphur domain
IPR017941
Rieske [2Fe-2S] iron-sulphur domain Domain 73 (272) No

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Clustering
 



Close Representative InterPro domains - Consensus schema
IPR017941 IPR013626


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
374 330 (88%) 261 (70%) [50; 513; 1311] ~444 3630 234