Family GP000697


Family ID GP000697  add to my list RDF
Family name Fructose-1,6-bisphosphatase family   suggest a name
Cross-reference(s) PMID:
Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species.
16109971 PMID:
The genome sequence and structure of rice chromosome 1.
12447438 PMID:
Molecular characterization of a cDNA encoding chloroplastic fructose-1,6-bisphosphatase from soybean (Glycine max L.).
9571641
Family Ontology
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molecular_function
phosphoric ester hydrolase activity
GO:0042578 (60%) - phosphoric ester hydrolase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Fructose-1,6-bisphosphatase family
GP000697 (351)
2 GP016041 (262) ,
Sedoheptulose-bisphosphatase subfamily
GP018336 (83) , GP030040 (6)
3 GP040679 (262) , GP043128 (83) , GP057535 (6)
4 GP070107 (262) , GP072632 (83) , GP090088 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 351
Species Count (w/o splice) Count (w/ splice)
7 7
4 4
45 45
13 16
6 6
9 9
4 4
6 6
7 7
11 11
7 7
5 10
5 6
7 7
5 5
5 12
5 9
5 5
7 7
7 7
5 5
4 5
4 4
10 10
7 18
6 6
11 25
7 7
9 9
4 7
14 14
8 8
6 6
5 5
6 6
12 17
9 9


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase
IPR000146
Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase Family 91 (319) No
Sedoheptulose-1,7-bisphosphatase
IPR023079
Sedoheptulose-1,7-bisphosphatase Family 20 (71) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Fructose-1,6-bisphosphatase, active site
IPR020548
Fructose-1,6-bisphosphatase, active site Active_site 60 (211) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000146 IPR020548


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
351 297 (85%) 264 (75%) [49; 344; 813] ~337 2251 220


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
351 264 (75%) 1.42585 1.2388 0.531525



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