Family GP002136


Family ID GP002136  add to my list RDF
Family name Translation initiation factor IF2/IF5 superfamily   suggest a name
Family Ontology
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molecular_function
binding
GO:0005488 (30%) - binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Translation initiation factor IF2/IF5 superfamily (plant-specificity: 30%)
GP002136 (340)
2
Translation initiation factor eIF-5 family
GP017650 (125) ,
Translation initiation factor eIF-2 beta subunit family
GP017746 (112) , GP018025 (98) , GP116572 (3)
3 GP042324 (125) , GP042427 (112) , GP042703 (98) , GP129484 (3)
4 GP071764 (125) , GP071875 (112) , GP072174 (98) , GP146323 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 340
Species Count (w/o splice) Count (w/ splice)
4 4
5 5
12 12
9 11
5 5
29 29
7 7
8 8
8 8
9 9
7 7
7 8
4 7
4 4
5 5
7 12
6 9
4 4
6 6
6 6
5 5
6 8
5 5
13 13
6 13
4 4
10 20
6 6
8 8
5 7
14 14
10 10
22 23
6 6
5 5
15 18
9 9


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Head decoration protein D
IPR004195
Head decoration protein D Family 1 (2) Yes
Peptidase S49, protease IV
IPR004634
Peptidase S49, protease IV Family 10 (33) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Translation initiation factor IF2/IF5
IPR002735
Translation initiation factor IF2/IF5 Domain 59 (200) No
Translation initiation factor IF2/IF5, N-terminal
IPR016189
Translation initiation factor IF2/IF5, N-terminal Domain 58 (197) No
Translation initiation factor IF2/IF5, zinc-binding
IPR016190
Translation initiation factor IF2/IF5, zinc-binding Domain 53 (180) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002735 IPR016189 IPR016190


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
340 301 (89%) 164 (48%) [54; 361; 1157] ~372 2283 183