Family GP000812


Family ID GP000812  add to my list RDF
Family name Vacuolar cation/proton exchanger family   suggest a name
Synonym(s) CAX
Cross-reference(s) PMID:
Characterization of CAX-like genes in plants: implications for functional diversity.
11080595
Comment
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
calcium:hydrogen antiporter activity
GO:0015369 (71%) - calcium:hydrogen antiporter activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Vacuolar cation/proton exchanger family
GP000812 (332)
2 GP015725 (325) ,
(plant-specificity: 97%)
GP112082 (7)
3 GP040384 (325) ,
(plant-specificity: 97%)
GP122869 (7)
4 GP070662 (324) ,
(plant-specificity: 97%)
GP137054 (7)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 332
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
5 8
1 1
10 10
3 3
9 9
7 7
17 17
10 10
6 10
6 8
5 5
6 6
8 18
6 6
5 5
5 5
7 7
4 4
6 9
3 3
21 21
8 15
5 5
7 30
6 6
13 13
5 9
11 11
4 4
5 5
5 5
6 7
19 40
6 6


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Calcium/proton exchanger
IPR004713
Calcium/proton exchanger Family 68 (227) No
Calcium/proton exchanger CAX
IPR004798
Calcium/proton exchanger CAX Family 71 (237) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Sodium/calcium exchanger membrane region
IPR004837
Sodium/calcium exchanger membrane region Domain 89 (296) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004798 IPR004837 IPR004713


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
332 254 (77%) 222 (67%) [66; 440; 901] ~408 2221 327




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