Family GP001651


Family ID GP001651  add to my list RDF
Family name Ribosomal protein L13 family   suggest a name
Cross-reference(s) PMID:
The ribosome in focus.
11290319 PMID:
The end of the beginning: structural studies of ribosomal proteins.
11114498
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Ribosomal protein L13 family
GP001651 (321)
2
Large subunit ribosomal protein l13ae subfamily
GP016953 (165) , GP019665 (78) , GP018982 (69) , GP112001 (7)
3 GP041593 (164) , GP044565 (78) , GP044933 (69) , GP051249 (7) , GP063186 (3)
4 GP070981 (164) , GP074136 (78) , GP074552 (69) , GP081980 (7)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 321
Species Count (w/o splice) Count (w/ splice)
3 3
3 3
35 35
9 9
5 5
4 4
4 4
9 9
7 7
7 7
6 6
8 18
4 4
4 4
5 5
5 12
4 4
6 6
7 7
6 6
5 5
6 9
7 7
14 14
12 29
5 5
8 16
6 6
6 6
5 8
18 18
7 7
6 6
5 5
4 4
11 12
6 6


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein L13, eukaryotic/archaeal
IPR005755
Ribosomal protein L13, eukaryotic/archaeal Family 38 (122) Yes
Ribosomal protein L13
IPR005822
Ribosomal protein L13 Family 85 (273) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ribosomal protein L13 domain
IPR023564
Ribosomal protein L13 domain Domain 87 (279) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR023564 IPR005755 IPR005822


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
321 272 (85%) 252 (79%) [33; 206; 410] ~189 1063 107


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
321 252 (79%) 2.13936 1.06457 1.78415



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Species



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