Family GP001597


Family ID GP001597  add to my list RDF
Family name Ccr4-not complex, subunits 3 and 5 family   suggest a name
Cross-reference(s) PMID:
Global control of gene expression in yeast by the Ccr4-Not complex.
12957374
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Ccr4-not complex, subunits 3 and 5 family (plant-specificity: 19%)
GP001597 (281)
2
(plant-specificity: 99%)
GP021526 (258) , GP016795 (163) , GP018289 (117)
3 GP041436 (163) , GP042990 (117) ,
(plant-specificity: 100%)
GP067196 (102)
4 GP070813 (163) , GP072489 (117) ,
(plant-specificity: 100%)
GP101902 (75)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 281
Species Count (w/o splice) Count (w/ splice)
2 2
7 7
6 6
5 5
3 3
10 10
4 4
6 6
6 6
9 9
10 10
5 14
3 7
4 4
3 3
6 13
3 4
3 3
2 2
3 3
4 4
3 5
5 5
10 10
5 34
2 2
4 30
2 2
5 5
3 10
5 5
5 5
4 4
2 2
5 12
8 21
4 4


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
CCR4-NOT complex, subunit 3/ 5
IPR012270
CCR4-NOT complex, subunit 3/ 5 Family 26 (73) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
NOT2/NOT3/NOT5
IPR007282
CCR4-Not complex component, Not N-terminal domain
IPR007207



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
281 176 (63%) 134 (48%) [74; 626; 2432] ~633 4185 279