Family GP001042


Family ID GP001042  add to my list RDF
Family name Isocitrate/isopropylmalate dehydrogenase family   suggest a name
Family Ontology
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molecular_function
isocitrate dehydrogenase (NAD+) activity
GO:0004449 (68%) - isocitrate dehydrogenase (NAD+) activity
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0016616 (94%) - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Isocitrate/isopropylmalate dehydrogenase family (plant-specificity: 9%)
GP001042 (192)
2
Isocitrate dehydrogenase [NAD] subfamily
GP016421 (192)
3 GP041040 (192)
4 GP070441 (192)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 192
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
6 7
2 2
12 12
5 5
8 8
5 5
5 5
5 5
3 6
3 4
4 4
4 4
7 11
3 4
3 3
3 3
4 4
3 3
6 7
2 2
5 5
4 11
4 4
6 14
3 3
5 5
3 6
8 8
3 3
4 5
4 4
4 5
6 7
4 4


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Isocitrate dehydrogenase NAD-dependent
IPR004434
Isocitrate dehydrogenase NAD-dependent Family 68 (131) Yes
Tartrate dehydrogenase
IPR011829
Tartrate dehydrogenase Family 2 (3) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Isopropylmalate dehydrogenase-like domain
IPR024084
Isopropylmalate dehydrogenase-like domain Domain 94 (180) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR024084 IPR004434


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
192 160 (83%) 141 (73%) [59; 366; 802] ~335 1458 298




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