Gene AT2G37390.1


Sequence ID AT2G37390.1  add to my list
Species Arabidopsis thaliana
Alias Q58FZ0
Length 259aa
PubMed References
Open Display PubMed Reference(s) (5)
Accession Description
Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.
10617197 		Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.
Cloning and sequencing of cDNAs for hypothetical genes from chromosome 2 of Arabidopsis.
12481096 		Cloning and sequencing of cDNAs for hypothetical genes from chromosome 2 of Arabidopsis.
Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.
27862469 		Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.
Heavy metal-associated isoprenylated plant protein (HIPP): characterization of a family of proteins exclusive to plants.
23368984 		Heavy metal-associated isoprenylated plant protein (HIPP): characterization of a family of proteins exclusive to plants.
Arabidopsis NPCC6/NaKR1 is a phloem mobile metal binding protein necessary for phloem function and root meristem maintenance.
21193571 		Arabidopsis NPCC6/NaKR1 is a phloem mobile metal binding protein necessary for phloem function and root meristem maintenance.
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 259 amino acids

>AT2G37390.1_ARATH
MKGRMFCASQASTAICSSMDHVHKSTTTDEDERNSGRAIDRHNPIIKDGRRSFADDFIKL
PTSAEDGEMSNKKLEIYKGRRSITGRRSTGGGGGGGAAALLKLITNDIGLARKSFSCVAR
PACDLIKTPVGSTRYLLGSDPDSITGSVDQDPAKTVEAEAPAGEDKTLTEKKTTCGDTDQ
QVVVLKVSLHCRGCEGKVRKHLARMQGVTSFNIDFAAKKVTVTGDITPLEILDSISKVKN
AQFWTNPTIPKPNVETQNP




Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP015837 Unannotated cluster
3 GP040905 Unannotated cluster
4 GP070656 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily
SODIUM POTASSIUM ROOT DEFECTIVE 2/3
IPR016578 		SODIUM POTASSIUM ROOT DEFECTIVE 2/3 Family

IPR006121 IPR036163 IPR016578
Figure 1: IPR domains for AT2G37390.1



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
MELO3C003095.2.1 orthology 1 3 142 2.86e-41
brana_pan_p030312 orthology 0.238 3 341 6e-119
brana_pan_p036701 orthology 0.253 3 - -
braol_pan_p021666 orthology 0.247 2 - -
braol_pan_p031578 orthology 0.237 2 356 4.98e-125
brarr_pan_p002630 orthology 0.255 3 - -
brarr_pan_p008392 orthology 0.248 3 351 5.02e-123
cajca.ICPL87119.gnm1.ann1.C.cajan_09762.1 orthology 1 4 176 3.4e-44
cajca.ICPL87119.gnm1.ann1.C.cajan_37472.1 orthology 1 5 - -
cicar_pan_p008704 orthology 1 4 158 9.29e-48
cicar_pan_p017889 orthology 1 4 - -
cucsa_pan_p020833 orthology 1 3 - -
medtr_pan_p001385 orthology 1 4 168 3.91e-51
medtr_pan_p025678 orthology 1 4 - -
phavu.G19833.gnm2.ann1.Phvul.001G171400.1 orthology 1 5 175.3 5.2e-44
phavu.G19833.gnm2.ann1.Phvul.L001741.1 orthology 1 5 - -
soybn_pan_p015281 orthology 1 5 - -
soybn_pan_p025035 orthology 1 5 - -
soybn_pan_p025142 orthology 0.991 4 181 4.11e-56