Gene Cc06_g04230


Sequence ID Cc06_g04230  add to my list
Species Coffea canephora
Alias No gene alias
Length 356aa
Gene Annotation Putative Heavy metal transport/detoxification superfamily protein
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 356 amino acids

>Cc06_g04230_COFCA
MGEKDEKKNEGEKKVTEAKNQGEKKTADGGGKKDDAQSPIVLKLDLHCEGCAKKVKRSIK
HFDGVEDVKADCASNKLTVTGNVDPGWLREKVEQRTKKKVELLSPPSKKDSGGGGDKKAD
DKADKKSDDKKKDEPKKPKEPQVSTVVLKIRLHCDGCAHKIKRIIKKIDGVEAVAVDNEK
DLVTVKGTMDAKDLTPYLKDKLKRTVDVVPPKKDDGGGDKKEKEAGGGDKKEKEKQKESS
GEKGAAESKGGAGGGGGDKGKSIEEPKVGVHKLEYHGASASTPYTYYYYGMPVYNQSYAN
QDYGVSVPTMYGQGGYGTTGYVVDYRPHEPPPPPPVYLPAHDQMFSDENPNACSVM





Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015545
Heavy metal transport/detoxification group1
3 GP040674 Unannotated cluster
4 GP071484 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for Cc06_g04230



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Ca_452_22.1 orthology 0.0136 1 450.3 3.1e-126
Ca_7_292.1 orthology 0.0136 1 - -
DCAR_014996 orthology 0.623 5 186.4 3.5e-47
DCAR_017683 orthology 0.608 5 - -
HanXRQChr01g0027741 orthology 0.751 5 - -
HanXRQChr13g0401031 orthology 0.814 5 - -
HanXRQChr14g0454431 orthology 0.69 5 198 1.6e-50
HanXRQChr17g0570331 orthology 0.677 5 - -
Oeu005022.1 orthology 0.584 2 - -
Oeu016984.1 orthology 0.556 2 190.7 2.5e-48
Oeu019283.1 orthology 0.518 2 - -
Oeu045227.1 orthology 0.649 2 - -
Oeu061953.1 orthology 0.583 2 - -
PGSC0003DMP400006915 orthology 0.496 6 232.3 5.2e-61
Solyc09g008200.2.1 orthology 0.536 6 228 9.8e-60
Solyc10g086280.1.1 orthology 0.677 5 - -
capan_pan_p000093 orthology 0.803 5 - -
capan_pan_p021581 orthology 0.557 5 184 4.15e-56
ipotf_pan_p002813 orthology 0.649 5 259 1.44e-84
ipotf_pan_p014346 orthology 0.577 5 - -
itb06g04100.t1 orthology 0.569 5 185.3 7.9e-47
itb15g00310.t1 orthology 0.654 5 - -