Gene Solyc01g006170.2.1


Sequence ID Solyc01g006170.2.1  add to my list
Species Solanum lycopersicum
Alias No gene alias
Length 288aa



Length: 288 amino acids

>Solyc01g006170.2.1_SOLLC
MNPENEDFDPETESESEDEEGDQQVVKLSEPSKTAVYNKDGLLERLADISWPDDLDWTHR
LSIDREEQEEVDVNDDLAREHSFYTQGLEGIRQAYVNFQSTGEPFLRPSDYYAEMVKSDT
HMEKVKGRLLAEKRRIEESEERRKARDNKKLAKDVQAQKMKERTKQKKQEIESVKKWRKQ
RQQSGFDKEDAGGLDLAFNGGEANKPYQRSNKKRPGVSPGDRSGGKATFGGKGKGFDKKR
KSREFKDSKFGFGGRKGLKKQNTADTTNDFGGFHKGDRSAKNNKRVKR




Clustering Level Family ID Family Name
1
Unknown function duf1138 family
GP002478		 Unknown function duf1138 family
2 GP018276 Unannotated cluster
3 GP042981 Unannotated cluster
4 GP075980 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Eukaryotic rRNA processing
IPR008610 		Eukaryotic rRNA processing Family

IPR008610
Figure 1: IPR domains for Solyc01g006170.2.1



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT3G22660.1 orthology 0.587 4 - -
brana_pan_p006433 orthology 0.569 5 - -
brana_pan_p007884 orthology 0.568 6 - -
brana_pan_p012403 orthology 0.562 5 - -
brana_pan_p034179 orthology 0.55 5 - -
braol_pan_p022657 orthology 0.548 5 - -
braol_pan_p024061 orthology 0.609 6 - -
braol_pan_p030426 orthology 0.569 5 - -
brarr_pan_p009571 orthology 0.55 5 - -
brarr_pan_p026538 orthology 0.557 4 - -
brarr_pan_p031703 orthology 0.556 5 - -
capan_pan_p017109 orthology 0.186 1 281 3.89e-95
ipotf_pan_p017885 orthology 0.447 3 239 2.93e-78
ipotf_pan_p024335 orthology 0.722 2 - -
ipotf_pan_p027028 orthology 0.49 2 - -
itb11g17740.t1 orthology 0.44 2 - -
itb12g07110.t1 orthology 0.444 3 - -