Gene Solyc01g006170.2.1
Sequence ID | Solyc01g006170.2.1 add to my list |
---|---|
Species | Solanum lycopersicum |
Alias | No gene alias |
Length | 288aa |
Length: 288 amino acids
>Solyc01g006170.2.1_SOLLC MNPENEDFDPETESESEDEEGDQQVVKLSEPSKTAVYNKDGLLERLADISWPDDLDWTHR LSIDREEQEEVDVNDDLAREHSFYTQGLEGIRQAYVNFQSTGEPFLRPSDYYAEMVKSDT HMEKVKGRLLAEKRRIEESEERRKARDNKKLAKDVQAQKMKERTKQKKQEIESVKKWRKQ RQQSGFDKEDAGGLDLAFNGGEANKPYQRSNKKRPGVSPGDRSGGKATFGGKGKGFDKKR KSREFKDSKFGFGGRKGLKKQNTADTTNDFGGFHKGDRSAKNNKRVKR
Clustering Level | Family ID | Family Name |
---|---|---|
1 | Unknown function duf1138 family
GP002478 |
Unknown function duf1138 family |
2 | GP018276 | Unannotated cluster |
3 | GP042981 | Unannotated cluster |
4 | GP075980 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
ID | Name | Type |
---|---|---|
Eukaryotic rRNA processing
IPR008610
|
Eukaryotic rRNA processing | Family |
Figure 1: IPR domains for Solyc01g006170.2.1
Homology | RBH | ||||
---|---|---|---|---|---|
Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
AT3G22660.1 | orthology | 0.587 | 4 | - | - |
brana_pan_p006433 | orthology | 0.569 | 5 | - | - |
brana_pan_p007884 | orthology | 0.568 | 6 | - | - |
brana_pan_p012403 | orthology | 0.562 | 5 | - | - |
brana_pan_p034179 | orthology | 0.55 | 5 | - | - |
braol_pan_p022657 | orthology | 0.548 | 5 | - | - |
braol_pan_p024061 | orthology | 0.609 | 6 | - | - |
braol_pan_p030426 | orthology | 0.569 | 5 | - | - |
brarr_pan_p009571 | orthology | 0.55 | 5 | - | - |
brarr_pan_p026538 | orthology | 0.557 | 4 | - | - |
brarr_pan_p031703 | orthology | 0.556 | 5 | - | - |
capan_pan_p017109 | orthology | 0.186 | 1 | 281 | 3.89e-95 |
ipotf_pan_p017885 | orthology | 0.447 | 3 | 239 | 2.93e-78 |
ipotf_pan_p024335 | orthology | 0.722 | 2 | - | - |
ipotf_pan_p027028 | orthology | 0.49 | 2 | - | - |
itb11g17740.t1 | orthology | 0.44 | 2 | - | - |
itb12g07110.t1 | orthology | 0.444 | 3 | - | - |