Gene Sspon.01G0018780-1A


Sequence ID Sspon.01G0018780-1A  add to my list
Species Saccharum spontaneum
Alias No gene alias
Length 359aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 359 amino acids

>Sspon.01G0018780-1A_SACSP
MGEEKKAGKDGGGDKKKDAGAGAAPQPIVLKVDLHCAGCASKVRKAIKRAPGVESVTPDM
AAGKVVVTGPADAVELKERIEARAKKSVQIVSAGAGPPKKEKEKEKKADGGEKKADKEKG
GDGGEKKADKEKGGGGEKKAEKEKGGGGGGEKKGDKEKGADKPKEEKKPKEETVTLKIRL
HCDGCIDRIKRRISKIKGVKDVAFDAAKDLVKVTGTMDAAALPAYLREKLSRDVEIVAPG
KKDGGGGDKKDKGAGDGGDKKKDGGGEEKKDKAVAASASVAPMPLADAGMYQMPPHYGYG
AYPPAPGGYYGGAPPHNHAGGFYPNAGVHYPPAPAYGYGPSHLHAPQMFSDENPNACSV




Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015545		 Heavy metal transport/detoxification group1
3 GP040674 Unannotated cluster
4 GP071484 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for Sspon.01G0018780-1A



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Sspon.01G0003000-1P ultra-paralogy 0.0035 0 - -
Sspon.01G0003000-3D ultra-paralogy 0.0037 0 - -
Sspon.01G0018780-2B ultra-paralogy 0.0101 0 - -
maize_pan_p002998 orthology 0.0904 2 - -
maize_pan_p022093 orthology 0.125 2 399 1.38e-138
maize_pan_p037219 orthology 0.161 2 - -
sorbi_pan_p008991 orthology 0.0497 1 - -