Gene Sspon.02G0001280-2C


Sequence ID Sspon.02G0001280-2C  add to my list
Species Saccharum spontaneum
Alias No gene alias
Length 367aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 367 amino acids

>Sspon.02G0001280-2C_SACSP
MASGEAEPLQYTTTTLRVSIHCEGCKKKVKKVLHGIEGTYVRTPCVLVLLPPAIPRFTVP
TTDCLTGFCVCGGAPSGVYKVTVDAAQHKVTVTGEVGADALLRRLHKAGKQAALWPSPAP
APVEAKKPEEATPAALPVQAGESCAKDAADAKPPKEAEAKEKPPEKGDGKEKKPAKDHKA
DKGEAEAKPNKDAEAITEPKETKKGSPEPAKQDAAEEPSGGGKKGKKNKKNKPKEGGEGE
EAPVPAPAAPEKKPHQPQPPVPAPSPGPERPPPAAFPYYAAQPVLSYNVAHPSSSVSYYA
PTPGVPMHPMPPPSPPQVVPYGYPPYPPMVPVPAEFLYGPPGMRSSPPEESYNNMFNEDN
ANSCSLM




Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for Sspon.02G0001280-2C



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AUR62008611-RA orthology 1 5 - -
Bv7_164120_fciq.t1 orthology 1 5 - -
Sspon.02G0001280-1A ultra-paralogy 0.0087 0 - -
Sspon.02G0001280-1P ultra-paralogy 0.018 0 - -
Sspon.02G0001280-3D ultra-paralogy 0.0189 0 - -
evm_27.model.AmTr_v1.0_scaffold00016.303 orthology 1 3 - -
maize_pan_p029987 orthology 0.257 2 - -
maize_pan_p037490 orthology 0.263 2 - -
sorbi_pan_p005326 orthology 0.13 1 - -