Gene Sspon.04G0014270-1A


Sequence ID Sspon.04G0014270-1A  add to my list
Species Saccharum spontaneum
Alias No gene alias
Length 482aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 482 amino acids

>Sspon.04G0014270-1A_SACSP
MSKEDVVKVQTLMLRVNIHCDGCEKKVKKTLHKIDGVYQSSIDAEQGKVTVSGLLDPDTI
IRKLNKAGKPAQLWGSKPGVPHNAHHGGGGGGKGQPKDAGGKGHSKDAGGGKGHSKDAGG
GKAQKGGAGGGGHKGAGGGGGGGGGGKDPKMVMPQPTPQQLQQLQQQLQMKGLKLPPHLL
GGNMPAFPAAAPLKDPKSVKFTLPEDNFDDDGSEFDDEFDDDDFDDEDDYDDGFDDDVYD
DPKMMMKPMAMLPPAAGGGDKKGGGGKKGGGGGGNEIPVQIKGNNHGGGQPYNAKGGAPG
GGSHLGQGKKGGGVGVGGPMGGMLPQQGMMRPNMLGVAGAGFPGTAQMGGGPIGMPMGHP
HMGGIMQQGGGGGGGGMPGLGFYQGSANGGGIHSGAEMLQAAAAAGNPMAQQQYMALMQQ
QQQQQQQQMMLQHGNGGAGYPAMGYGYGRPPMHYPMGYPMPPHSHADNYNIFSDENPNSC
SV




Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP141523 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for Sspon.04G0014270-1A



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Sspon.04G0014280-2C ultra-paralogy 0.0315 0 - -
Sspon.04G0027130-1B ultra-paralogy 0.0137 0 - -
Sspon.04G0037020-1D ultra-paralogy 0.0403 0 - -
maize_pan_p000549 orthology 0.108 1 502 9.17e-176
maize_pan_p023738 orthology 0.0799 1 - -
sorbi_pan_p005063 orthology 0.0682 2 501 3.13e-175