Gene brana_pan_p001089


Sequence ID brana_pan_p001089  add to my list
Species Brassica napus
Alias No gene alias
Pangenome status Core (3/3)
Length 393aa



Length: 393 amino acids

>brana_pan_p001089_BRANA
MGFWSLLEVASMPVIQVLFISVVGAFLATDRCKLFPVEARNSMNKVVFVLFAPALMFANL
AQTVTLEDMISWWFMPVNMGLTFLIGGILGWIVVKILKPPPYLEGLIVATCSSGNMGNLP
IILVPAICDEDKSPFGNRSVCRTVGLSYASFSMALGGFYIWTYTFRLIKGSAMKFKDIEE
SEQKAIRSSNSDLEADRKTHLLGAPEETLVKQETGFWRKGVDFLHEILEELRAPPSVGAI
IGFIFGAVTWLRNLIIGDDAPLRIVQTTAKLLGDGTIPCMTIILGGNLIQGLRSSAVKPV
VVLGIVCVRYILLPIIGIGIVKSAESFGFLPADPLFQYVLMLQFTLPPAMNIGTMTQLYN
VGQDECSVLMLWTYLVAILALTVWSTIFLHLLV


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Auxin efflux carrier family
GP000355		 Auxin efflux carrier family
2 GP015273 Unannotated cluster
3 GP040583 Unannotated cluster
4 GP463648 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Membrane transport protein
IPR004776 		Membrane transport protein Family

IPR004776
Figure 1: IPR domains for brana_pan_p001089



Represented sequence(s):
BRANA_v5.0
GSBRNA2T00026547001
GSBRNA2T00013056001
BRANA_Darmor_v8.1
BnaA07g02800.1D2
BnaC07g08180.1D2
BRANA_Tapidor_v6.3
BnaA02g22990.1T
Download sequences FASTA

  1. 2. 3. 4. 5.
1. BnaA07g02800.1D2 0.00 0.72 0.88 -0.00 2.64
2. BnaC07g08180.1D2 0.72 0.00 1.77 0.72 -0.00
3. BnaA02g22990.1T 0.88 1.77 0.00 0.88 1.77
4. GSBRNA2T00026547001 -0.00 0.72 0.88 0.00 2.64
5. GSBRNA2T00013056001 2.64 -0.00 1.77 2.64 0.00