Gene brana_pan_p002075
| Sequence ID | brana_pan_p002075 add to my list | ||
|---|---|---|---|
| Species | Brassica napus | ||
| Alias | No gene alias | ||
| Pangenome status | Core (3/3) | ||
| Length | 150aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 150 amino acids
>brana_pan_p002075_BRANA MGALDSLSEYISDYFHVSRKRRKRKVKQTVNIKVKMDCDGCERRVKNAVSSMKGVETVEL NRKIHKVTVSGYVEPKKVLKRVERTGKKAEMWPYVPYNVVAYPYAVGVYDKKAPAGYVRK SEQSQPLPGAPDDVIMSLFSDENPNACTVM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | Heavy metal transport/detoxification group1
GP015397 |
Heavy metal transport/detoxification group1 |
| 3 | GP040065 | Unannotated cluster |
| 4 | GP463678 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for brana_pan_p002075
Represented sequence(s):
BRANA_Darmor_v8.1
BRANA_Tapidor_v6.3
BRANA_v5.0
| 1. | 2. | 3. | 4. | 5. | 6. | |
|---|---|---|---|---|---|---|
| 1. BnaA07g32510.1D2 | 0.00 | -0.00 | -0.00 | -0.00 | -0.00 | -0.00 |
| 2. BnaC06g35710.1D2 | -0.00 | 0.00 | -0.00 | -0.00 | -0.00 | -0.00 |
| 3. BnaA07g27910.1T | -0.00 | -0.00 | 0.00 | -0.00 | -0.00 | -0.00 |
| 4. BnaC06g33970.1T | -0.00 | -0.00 | -0.00 | 0.00 | -0.00 | -0.00 |
| 5. GSBRNA2T00102441001 | -0.00 | -0.00 | -0.00 | -0.00 | 0.00 | -0.00 |
| 6. GSBRNA2T00103152001 | -0.00 | -0.00 | -0.00 | -0.00 | -0.00 | 0.00 |
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| AT1G71050.1 | orthology | 0.127 | 2 | 265 | 5.28e-93 |
| braol_pan_p030499 | orthology | 0 | 1 | 299 | 3.33e-106 |
| brarr_pan_p031034 | orthology | 0 | 1 | 299 | 2.97e-106 |