Gene brana_pan_p010887
| Sequence ID | brana_pan_p010887 add to my list |
|---|---|
| Species | Brassica napus |
| Alias | No gene alias |
| Pangenome status | Core (3/3) |
| Length | 383aa |
Length: 383 amino acids
>brana_pan_p010887_BRANA MKLLDLFITSSIPVGKILVITGIGFYLALDRVNILNQDARKQLNNIVFYVFSPSLVASSL AETITYESLVKMWFMPLNVVLTFIIGSFLGWLVIKVTKPPSHLRGIIVGCCAAGNLGNMP LIIIPAICNEKGSPFGDPETCEKYGLGYVALSMAIGSICIWTYVYNLMRVLARETPIIIG TSSTVPLIPTKVVQVEEQFGTWSKIKQRVCSAAENINLGTIFAPSTIAALIALGVGLIPT LRKLLIGNTAPLRVIEDSVSLLGEGTIPLLTLIIGGNLLKGLRGSGMHKSVILGVVVVRY VLLPIIGVLIVQGAHYLGLITSEPLYQFVLLLQYVVPPAMNLGTITQLFGSGESECSVIL FWTYALASVSLTLWPTFFMWLVA
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Auxin efflux carrier family
GP000355 |
Auxin efflux carrier family |
| 2 | GP015273 | Unannotated cluster |
| 3 | GP040583 | Unannotated cluster |
| 4 | GP463693 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Membrane transport protein
IPR004776
|
Membrane transport protein | Family |
Figure 1: IPR domains for brana_pan_p010887
Represented sequence(s):
BRANA_Darmor_v8.1
BRANA_Tapidor_v6.3
BRANA_v5.0
| 1. | 2. | 3. | 4. | 5. | |
|---|---|---|---|---|---|
| 1. BnaA06g15550.1D2 | 0.00 | 1.85 | 2.22 | 4.96 | -0.00 |
| 2. BnaC05g17130.1D2 | 1.85 | 0.00 | 4.49 | -0.00 | 1.85 |
| 3. BnaA06g16160.1T | 2.22 | 4.49 | 0.00 | 4.49 | 2.22 |
| 4. GSBRNA2T00047819001 | 4.96 | -0.00 | 4.49 | 0.00 | 1.85 |
| 5. GSBRNA2T00043175001 | -0.00 | 1.85 | 2.22 | 1.85 | 0.00 |