Gene brana_pan_p016251
| Sequence ID | brana_pan_p016251 add to my list | ||
|---|---|---|---|
| Species | Brassica napus | ||
| Alias | No gene alias | ||
| Pangenome status | Core (3/3) | ||
| Length | 478aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 478 amino acids
>brana_pan_p016251_BRANA MSKEEFMNIQTCVLKVNIHCEGCKQKVKKILQKIEGVFTTKIDADQGKVTVSVSGSVDPS VLIEKLAKSGKHAEVWGPPKGNNNPNQSHDSHLVNQLKGMQIDNKKGSGGKNNNNEKCPK NVGSGGGGNNPHQIQKMKGFQDMKLPQQLKDLKGSVPENKNQKQPGAKFNVPEEEEDDYF SDDDDEFTDAGDEDSDDDEFDNLPSPSNKMKPNMMMPNNQQMMMNANLGGGPTKTGGKRV YGGGKGEPNGGRKGDSGGAGNQNQGGGKNGGQNANGGHPQDGKNGGGPNAGKKVNGGGGG IPAGFLPMGGGVPPNMSMPIGLMGMGDPMGNIPAGLCPMGGAGPSNITMPIGGLMGMGGL MGNIPAVHGLPATGASGIPPGYFQRAGPDPIQMQHQQQQQQKQQQYLAAVMNQQRAMENE RFQPMMYARPPLAVNYMPPHIHLHQYPNPYDPYPYPPHGNDQYFHVSNEENTSSCDIM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP023608 | Unannotated cluster |
| 3 | GP040483 | Unannotated cluster |
| 4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for brana_pan_p016251
Represented sequence(s):
BRANA_Darmor_v8.1
BRANA_Tapidor_v6.3
BRANA_v5.0
| 1. | 2. | 3. | 4. | |
|---|---|---|---|---|
| 1. BnaA03g34420.1D2 | 0.00 | 4.53 | 13.12 | -0.00 |
| 2. BnaA03g25420.1T | 4.53 | 0.00 | 13.50 | 4.50 |
| 3. BnaA03g25440.1T | 13.12 | 13.50 | 0.00 | 13.12 |
| 4. GSBRNA2T00023473001 | -0.00 | 4.50 | 13.12 | 0.00 |
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| AT3G06130.1 | orthology | 0.268 | 1 | 337 | 1.96e-111 |
| MELO3C021404.2.1 | orthology | 0.694 | 3 | - | - |
| cucsa_pan_p012169 | orthology | 0.662 | 3 | - | - |