Gene brana_pan_p028725
| Sequence ID | brana_pan_p028725 add to my list |
|---|---|
| Species | Brassica napus |
| Alias | No gene alias |
| Pangenome status | Core (3/3) |
| Length | 389aa |
Length: 389 amino acids
>brana_pan_p028725_BRANA MMKLLNLFITSSKPVVEILLITIVGFYLALDGVNLLGQDARKYLNNIVFYVFSPSLIGSR LADSVTYESLVKMWFMPVNVLLTFIIGSLLGWIVIVITKPPSHLRGLIVGCCAAGNLGNM PLIIVPAICKERGGPFGDPENCQKYGMGYVALSMAMGSVYIWTYVYNLMRVLNSPIETQP SIESNYDTCKVPLIPSKEEEDNQKAGRWDRIKRRIVSLSEKVNLRTIFAPSTIAAMIALV IGLITPLRKLIIGNGAPLGVLQDSVTLVGDGAIPAMTLIIGGNLLKGMRSSGMKKSTIVG VLVARYILLPISGVLIVRGAYKLDMIPSEPLYQFVLLIQYAVPPAMNLGTITQLFGAGES ECSVIMLWTYALASVSLTAWPTFFMWLVA
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Auxin efflux carrier family
GP000355 |
Auxin efflux carrier family |
| 2 | GP015273 | Unannotated cluster |
| 3 | GP040583 | Unannotated cluster |
| 4 | GP463693 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Membrane transport protein
IPR004776
|
Membrane transport protein | Family |
Figure 1: IPR domains for brana_pan_p028725
Represented sequence(s):
BRANA_v5.0
BRANA_Darmor_v8.1
BRANA_Tapidor_v6.3
| 1. | 2. | 3. | 4. | 5. | 6. | |
|---|---|---|---|---|---|---|
| 1. BnaA07g36450.1D2 | 0.00 | 5.44 | -0.00 | 5.44 | -0.00 | 123.77 |
| 2. BnaC06g40810.1D2 | 5.44 | 0.00 | 5.44 | -0.00 | 5.44 | 128.57 |
| 3. BnaA07g31000.1T | -0.00 | 5.44 | 0.00 | 5.44 | -0.00 | 123.77 |
| 4. BnaC06g37900.1T | 5.44 | -0.00 | 5.44 | 0.00 | 5.44 | 128.57 |
| 5. GSBRNA2T00146594001 | -0.00 | 5.44 | -0.00 | 5.44 | 0.00 | 123.77 |
| 6. GSBRNA2T00147794001 | 123.77 | 128.57 | 123.77 | 128.57 | 123.77 | 0.00 |