Gene brana_pan_p029929
| Sequence ID | brana_pan_p029929 add to my list | ||
|---|---|---|---|
| Species | Brassica napus | ||
| Alias | No gene alias | ||
| Pangenome status | Core (3/3) | ||
| Length | 250aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 250 amino acids
>brana_pan_p029929_BRANA MFCASQASTATASHDERSVAARAIDRHNPIIKDGRRSFTAPCSSGDDYIAPYRQLSKVTR IPSSSGEGKMIQVVEKGRKSTSGSLLKLSDNISLARKSFGCVAGPACDVTESTPPGSTRY LLGSEPVSSGKDTVVTEEGEPSLAKRGSGAADEEKKKKTSSGSDQASKVVVLRVSLHCHC RGCQGKVKKHLSRMQGVTSFSIDFASKKVTVTGDVTPLEVLGCLSKVKNAQFWTPPPPPP SSLPRATLEN
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP015837 | Unannotated cluster |
| 3 | GP040905 | Unannotated cluster |
| 4 | GP070656 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
|
SODIUM POTASSIUM ROOT DEFECTIVE 2/3
IPR016578
|
SODIUM POTASSIUM ROOT DEFECTIVE 2/3 | Family |
Figure 1: IPR domains for brana_pan_p029929
Represented sequence(s):
BRANA_v5.0
BRANA_Darmor_v8.1
BRANA_Tapidor_v6.3
| 1. | 2. | 3. | 4. | 5. | 6. | |
|---|---|---|---|---|---|---|
| 1. BnaA07g26720.1D2 | 0.00 | 9.72 | -0.00 | 9.72 | -0.00 | 5.07 |
| 2. BnaC06g16610.1D2 | 9.72 | 0.00 | 9.72 | -0.00 | 9.72 | 6.76 |
| 3. BnaA07g21870.1T | -0.00 | 9.72 | 0.00 | 9.72 | -0.00 | 5.07 |
| 4. BnaC04g10100.1T | 9.72 | -0.00 | 9.72 | 0.00 | 9.72 | 6.76 |
| 5. GSBRNA2T00007695001 | -0.00 | 9.72 | -0.00 | 9.72 | 0.00 | 5.07 |
| 6. GSBRNA2T00124669001 | 5.07 | 6.76 | 5.07 | 6.76 | 5.07 | 0.00 |
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| AT3G53530.2 | orthology | 0.201 | 3 | - | - |
| MELO3C003095.2.1 | orthology | 1 | 5 | - | - |
| braol_pan_p003859 | orthology | 0.0357 | 2 | 423 | 4.48e-152 |
| brarr_pan_p026146 | orthology | 0.0107 | 1 | 454 | 2.97e-164 |
| cajca.ICPL87119.gnm1.ann1.C.cajan_09762.1 | orthology | 1 | 6 | - | - |
| cajca.ICPL87119.gnm1.ann1.C.cajan_37472.1 | orthology | 1 | 7 | - | - |
| cicar_pan_p008704 | orthology | 1 | 6 | - | - |
| cicar_pan_p017889 | orthology | 1 | 6 | - | - |
| cucsa_pan_p020833 | orthology | 1 | 5 | - | - |
| medtr_pan_p001385 | orthology | 1 | 6 | - | - |
| medtr_pan_p025678 | orthology | 1 | 6 | - | - |
| phavu.G19833.gnm2.ann1.Phvul.001G171400.1 | orthology | 1 | 7 | - | - |
| phavu.G19833.gnm2.ann1.Phvul.L001741.1 | orthology | 1 | 7 | - | - |
| soybn_pan_p015281 | orthology | 1 | 7 | - | - |
| soybn_pan_p025035 | orthology | 1 | 7 | - | - |
| soybn_pan_p025142 | orthology | 1 | 6 | - | - |