Gene brana_pan_p030902


Sequence ID brana_pan_p030902  add to my list
Species Brassica napus
Alias No gene alias
Pangenome status Core (3/3)
Length 121aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 121 amino acids

>brana_pan_p030902_BRANA
MDCEGCERRVRKSVQGMKGVTNVTVDPKQSKLTVEGFVQPNKVVRRVMHRTGKKAELWPY
VPYEVVPHPYAPGAYDKKAPPGYVRNALADPLVAPLARASSFEVKYTSAFSDDNPNACTI
M


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP463617 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for brana_pan_p030902



Represented sequence(s):
BRANA_v5.0
GSBRNA2T00147406001
GSBRNA2T00125048001
BRANA_Darmor_v8.1
BnaA06g29350.1D2
BnaC03g48140.1D2
BRANA_Tapidor_v6.3
BnaC03g43190.1T
Download sequences FASTA

  1. 2. 3. 4. 5.
1. BnaA06g29350.1D2 0.00 0.83 -0.00 0.83 -0.00
2. BnaC03g48140.1D2 0.83 0.00 0.83 -0.00 0.83
3. BnaC03g43190.1T -0.00 0.83 0.00 0.83 -0.00
4. GSBRNA2T00125048001 0.83 -0.00 0.83 0.00 0.69
5. GSBRNA2T00147406001 -0.00 0.83 -0.00 0.69 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT5G66110.1 orthology 0.0467 3 242 2.72e-84
Cg1g001350.1 orthology 0.449 10 203 9.61e-69
Cm173610.1 orthology 0.443 9 - -
Cm280940.1 orthology 0.443 9 211 7.19e-72
Cs1g25820.1 orthology 0.442 10 208 1.09e-70
MELO3C007926.2.1 orthology 0.331 5 204 3.03e-69
Manes.01G148900.1 orthology 0.391 5 196 5.05e-66
braol_pan_p039277 orthology 0.0092 2 248 5.18e-87
brarr_pan_p021369 orthology 0 1 251 5.6e-88
cucsa_pan_p018650 orthology 0.331 5 203 8.16e-69
maldo_pan_p003753 orthology 0.384 7 206 2.94e-70
medtr_pan_p005386 orthology 0.526 9 204 2.93e-69
thecc_pan_p011891 orthology 0.455 9 202 1.81e-68