Gene brana_pan_p032804
Sequence ID | brana_pan_p032804 add to my list | ||
---|---|---|---|
Species | Brassica napus | ||
Alias | No gene alias | ||
Pangenome status | Core (3/3) | ||
Length | 151aa | ||
Gene Ontology |
Display term(s) (1)
|
Length: 151 amino acids
>brana_pan_p032804_BRANA MGDLQIVPAYNKVEAQYVEMMVPLYSYGCEKKIKKALSHLKGIYSVKVDYYKQKVTVWGI CNKLDVLAMVKKKRKEARFWNAEENDQESVDDTIVQKEDTVKTSSDSDKSSAFYTYSPSS PRFKRPPLSLIRTSSFTWKAVKKVFSRSISF
Multiple alignment used to build consensus sequence:
Clustering Level | Family ID | Family Name |
---|---|---|
1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
2 | Heavy metal transport/detoxification group1
GP015397 |
Heavy metal transport/detoxification group1 |
3 | GP342521 | Unannotated cluster |
4 | GP077751 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
ID | Name | Type |
---|---|---|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for brana_pan_p032804
Represented sequence(s):
BRANA_Tapidor_v6.3
BRANA_Darmor_v8.1
BRANA_v5.0
1. | 2. | 3. | 4. | 5. | |
---|---|---|---|---|---|
1. BnaA01g17360.1D2 | 0.00 | 0.66 | 0.66 | 4.06 | 0.66 |
2. BnaC01g21080.1D2 | 0.66 | 0.00 | -0.00 | 4.75 | -0.00 |
3. BnaC01g16650.1T | 0.66 | -0.00 | 0.00 | 4.75 | -0.00 |
4. GSBRNA2T00149426001 | 4.06 | 4.75 | 4.75 | 0.00 | 4.75 |
5. GSBRNA2T00006317001 | 0.66 | -0.00 | -0.00 | 4.75 | 0.00 |
Homology | RBH | ||||
---|---|---|---|---|---|
Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
AT4G27590.2 | orthology | 0.139 | 3 | 238 | 1.2e-79 |
braol_pan_p006661 | orthology | 0 | 1 | 297 | 2.08e-105 |
brarr_pan_p021827 | orthology | 0.0062 | 2 | 296 | 7.55e-105 |