Gene brana_pan_p032804


Sequence ID brana_pan_p032804  add to my list
Species Brassica napus
Alias No gene alias
Pangenome status Core (3/3)
Length 151aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 151 amino acids

>brana_pan_p032804_BRANA
MGDLQIVPAYNKVEAQYVEMMVPLYSYGCEKKIKKALSHLKGIYSVKVDYYKQKVTVWGI
CNKLDVLAMVKKKRKEARFWNAEENDQESVDDTIVQKEDTVKTSSDSDKSSAFYTYSPSS
PRFKRPPLSLIRTSSFTWKAVKKVFSRSISF


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP342521 Unannotated cluster
4 GP077751 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for brana_pan_p032804



Represented sequence(s):
BRANA_v5.0
GSBRNA2T00006317001
GSBRNA2T00149426001
BRANA_Darmor_v8.1
BnaC01g21080.1D2
BnaA01g17360.1D2
BRANA_Tapidor_v6.3
BnaC01g16650.1T
Download sequences FASTA

  1. 2. 3. 4. 5.
1. BnaA01g17360.1D2 0.00 0.66 0.66 4.06 0.66
2. BnaC01g21080.1D2 0.66 0.00 -0.00 4.75 -0.00
3. BnaC01g16650.1T 0.66 -0.00 0.00 4.75 -0.00
4. GSBRNA2T00149426001 4.06 4.75 4.75 0.00 4.75
5. GSBRNA2T00006317001 0.66 -0.00 -0.00 4.75 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT4G27590.2 orthology 0.139 3 238 1.2e-79
braol_pan_p006661 orthology 0 1 297 2.08e-105
brarr_pan_p021827 orthology 0.0062 2 296 7.55e-105