Gene brana_pan_p035365
Sequence ID | brana_pan_p035365 add to my list | ||
---|---|---|---|
Species | Brassica napus | ||
Alias | No gene alias | ||
Pangenome status | Core (3/3) | ||
Length | 373aa | ||
Gene Ontology |
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Length: 373 amino acids
>brana_pan_p035365_BRANA MGEQKKEETVTKPEGDKKPVDGGNNTVVVMKLDMHCEGCGKKIKRILKKHKGVEDVNIDY KADKLTVVGNVDPSAVRDKVAERMKRKVEIVSTVAPKKEAPPPSGGEKKVVEEKPAEKKP ADEKPAGEKKVEMKKDEGEKKAPSPPAPPKESTVVLKTKLHCEGCEHKIKRIVNKIKGVK SVAIDSTKDLVIVKGIIDVKQLTPYLNEKLKRTVEVVPPKKEEGATVAAAAAPAGGEKKD KDVGEKKDGGGEKKKEVASAGGGDGGATLDVKKSEYSGYGYQPQPMYYNPPGQVYGQQHY MMQGQSSQSYVQEPYVNQGYVHESYMNQGYGQGYGQQAPPPPYMNHQGYADPYAHMRAPE MFSDENPNGCSVM
Multiple alignment used to build consensus sequence:
Clustering Level | Family ID | Family Name |
---|---|---|
1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
2 | GP023608 | Unannotated cluster |
3 | GP040483 | Unannotated cluster |
4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
ID | Name | Type |
---|---|---|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for brana_pan_p035365
Represented sequence(s):
BRANA_Tapidor_v6.3
BRANA_Darmor_v8.1
BRANA_v5.0
1. | 2. | 3. | 4. | 5. | |
---|---|---|---|---|---|
1. BnaC02g04600.1D2 | 0.00 | 4.60 | 2.45 | -0.00 | 13.05 |
2. BnaC02g03770.1D2 | 4.60 | 0.00 | 1.23 | 4.62 | 8.63 |
3. BnaC02g01980.1T | 2.45 | 1.23 | 0.00 | 2.46 | 8.63 |
4. GSBRNA2T00119598001 | -0.00 | 4.62 | 2.46 | 0.00 | 13.05 |
5. GSBRNA2T00080029001 | 13.05 | 8.63 | 8.63 | 13.05 | 0.00 |
Homology | RBH | ||||
---|---|---|---|---|---|
Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
AT5G03380.1 | orthology | 0.154 | 2 | - | - |
braol_pan_p004888 | orthology | 0.0097 | 2 | 506 | 9.67e-181 |
brarr_pan_p012244 | orthology | 0.0097 | 2 | 511 | 9.49e-183 |