Gene brana_pan_p038693


Sequence ID brana_pan_p038693  add to my list
Species Brassica napus
Alias No gene alias
Pangenome status Core (3/3)
Length 116aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 116 amino acids

>brana_pan_p038693_BRANA
MDCDGCERRLRNVVRRMKGVKTVEVNRKQSRLTVNGHVDPNKVLKRVKSTGKKAEFWPYI
PQHMVYYPFAPGMYDKRAPAGHIRNPTQAFPAANAPGENYVSLFSDDNVHAACSIM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP463678 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for brana_pan_p038693



Represented sequence(s):
BRANA_Darmor_v8.1
BnaA10g19400.1D2
BRANA_Tapidor_v6.3
BnaA10g25120.1T
BRANA_v5.0
GSBRNA2T00065867001
GSBRNA2T00094833001
Download sequences FASTA

  1. 2. 3. 4.
1. BnaA10g19400.1D2 0.00 -0.00 -0.00 0.87
2. BnaA10g25120.1T -0.00 0.00 -0.00 0.87
3. GSBRNA2T00065867001 -0.00 -0.00 0.00 1.35
4. GSBRNA2T00094833001 0.87 0.87 1.35 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
brana_pan_p014674 ultra-paralogy 0.0509 0 - -
braol_pan_p032933 orthology 0.0021 2 - -
brarr_pan_p002405 orthology 0.0087 2 - -