Gene brana_pan_p047775
| Sequence ID | brana_pan_p047775 add to my list |
|---|---|
| Species | Brassica napus |
| Alias | No gene alias |
| Pangenome status | Core (3/3) |
| Length | 384aa |
Length: 384 amino acids
>brana_pan_p047775_BRANA MPIVQVLLISVLGAFLATDYCSLLSADTRRSVNKLVFVVFTPCIMFANLAQTVTLQDIIS WWFMPINVGITFLVGGILGWLVVKLLNPKPQLHGLIIATCASGNMGNLMLILVPAICDEE GSPFGNRSVCRSIGLSYASFSMALGGFYIWTYSYQLVRSSATQFRALEAAGLVKSPNKEI DSDPRTLLLKPQQNQDLEIQVKEKVSTGTYIKDLLHQILEELFAPPTIGAILGFVFGATN WLRNLIIGENAPLRVIQDSVKLLGDGTIPCITLILGGNLIQGLRSSAVKTSVIVGVICVR YIILPVVGVGVVQLAWNLGYLPPDPLFRYVLMLQFTLPPAMNISTMAQLFDVAQDECSVI FLWTYLVASLALTVWSTIFLSILS
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Auxin efflux carrier family
GP000355 |
Auxin efflux carrier family |
| 2 | GP015273 | Unannotated cluster |
| 3 | GP040583 | Unannotated cluster |
| 4 | GP463648 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Membrane transport protein
IPR004776
|
Membrane transport protein | Family |
Figure 1: IPR domains for brana_pan_p047775
Represented sequence(s):
BRANA_Darmor_v8.1
BRANA_v5.0
BRANA_Tapidor_v6.3
| 1. | 2. | 3. | 4. | 5. | 6. | |
|---|---|---|---|---|---|---|
| 1. BnaC02g19210.1D2 | 0.00 | 1.05 | -0.00 | 10.26 | 2.83 | 2.57 |
| 2. BnaA02g39470.1D2 | 1.05 | 0.00 | 0.31 | 10.26 | -0.00 | 0.26 |
| 3. BnaA06g18460.1T | -0.00 | 0.31 | 0.00 | 9.28 | 0.31 | -0.00 |
| 4. BnaA06g18480.1T | 10.26 | 10.26 | 9.28 | 0.00 | 10.26 | 10.26 |
| 5. GSBRNA2T00016405001 | 2.83 | -0.00 | 0.31 | 10.26 | 0.00 | 0.25 |
| 6. GSBRNA2T00022610001 | 2.57 | 0.26 | -0.00 | 10.26 | 0.25 | 0.00 |