Gene brana_pan_p050967


Sequence ID brana_pan_p050967  add to my list
Species Brassica napus
Alias No gene alias
Pangenome status Core (3/3)
Length 152aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 152 amino acids

>brana_pan_p050967_BRANA
MGALDFLSDYFSNNFDVSIRKRKKHKVMQTVNIKVKIDCDGCERKIKNAVSSIKGAKSVE
VNRKMHKVTVSGYVDPKKVLKRVQSTGKKKAELWPYVPYTMVAYPYAAGAYDKRAPAGFV
RKSEQAQAQPGGTDDKLMSLFSDENPNACIVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP463678 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for brana_pan_p050967



Represented sequence(s):
BRANA_v5.0
GSBRNA2T00033152001
GSBRNA2T00061817001
BRANA_Tapidor_v6.3
BnaC05g15470.1T
BRANA_Darmor_v8.1
BnaA07g12030.1D2
BnaC07g15650.1D2
Download sequences FASTA

  1. 2. 3. 4. 5.
1. BnaA07g12030.1D2 0.00 1.32 -0.00 -0.00 1.32
2. BnaC07g15650.1D2 1.32 0.00 1.32 1.32 -0.00
3. BnaC05g15470.1T -0.00 1.32 0.00 -0.00 1.32
4. GSBRNA2T00033152001 -0.00 1.32 -0.00 0.00 1.32
5. GSBRNA2T00061817001 1.32 -0.00 1.32 1.32 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
braol_pan_p026013 orthology 0.0135 1 303 1.64e-107
brarr_pan_p015165 orthology 0.0206 2 296 5.93e-105