Gene braol_pan_p002896


Sequence ID braol_pan_p002896  add to my list
Species Brassica oleracea
Alias No gene alias
Pangenome status Dispensable (2/3)
Length 263aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 263 amino acids

>braol_pan_p002896_BRAOL
MGKNKQNGDADNKSKNQKNGDSNKSDTKNQKNGDADKSDKKNQCKEIVLKVYMHCEGCAS
QVSHCLRGYDGVEQIKIEVGENKVVVSGKFDDPVKILRRVQKKFSKNAELISPKPNPNQD
QKKEQQQKKESTPQIKTAILKMNIHCEGCVNEIKRGIEKIKGIQTAEPDRSKSMVVVRGV
MDPPKLVEEIKKKLKRHAELVSQNTEKGKGNNDKESNNNNKGNKKNEDSDGNTIFSYPPQ
YSAQHNYPSQIFSDENVHSCSIM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015545		 Heavy metal transport/detoxification group1
3 GP040674 Unannotated cluster
4 GP070448 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for braol_pan_p002896



Represented sequence(s):
BRAOL_HDEM
BolC5p35049H
BRAOL_TO1000
NC_027752.1_cds_XP_013585393.1_31474
Unrepresented genome(s):
BRAOL_A2_v1.0
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT3G02960.1 orthology 0.162 2 351 1.84e-123
Cg7g016680.1 orthology 1 7 182 9e-58
Cm174370.1 orthology 1 6 185 1.33e-58
Cs7g11080.1 orthology 1 7 196 1.57e-62
Manes.13G008700.1 orthology 0.976 5 203 9.11e-66
brana_pan_p048220 orthology 0.0201 1 428 5e-153
orange1.1t05450.1 orthology 1 7 - -
thecc_pan_p009145 orthology 0.909 4 217 1.01e-70
thecc_pan_p020513 orthology 1 4 - -