Gene braol_pan_p025817


Sequence ID braol_pan_p025817  add to my list
Species Brassica oleracea
Alias No gene alias
Pangenome status Core (3/3)
Length 158aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 158 amino acids

>braol_pan_p025817_BRAOL
MGVGGTLEYISELIGSGGSHSYGKRKKKKQFQTVELKVRMDCDGCVLKVKNSLSSLKGVK
SVEINKKQQKVTVSGYAEASKVLKKAKSTGKKAEIWPYVPYNLVAQPYIAQAYDKKAPPG
YVRKMDPYVTTGTMAVDNDDPSYTSMFSDDNPNACSIM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP463617 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for braol_pan_p025817



Represented sequence(s):
BRAOL_A2_v1.0
Bol028833
BRAOL_TO1000
NC_027748.1_cds_XP_013590106.1_81
BRAOL_HDEM
BolC1p00075H
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT4G39700.1 orthology 0.0649 2 295 2.32e-104
AUR62002038-RA orthology 0.387 5 - -
AUR62003759-RA orthology 0.368 5 218 7.78e-74
Bv6_135550_hnzj.t1 orthology 0.38 5 220 7.14e-75
PGSC0003DMP400038108 orthology 0.318 4 231 4.21e-79
Solyc04g054500.2.1 orthology 0.288 4 233 7.25e-80
brana_pan_p027029 orthology 0.0068 2 309 1.03e-109
brarr_pan_p028146 orthology 0.0068 2 309 8.36e-110