Gene braol_pan_p040751


Sequence ID braol_pan_p040751  add to my list
Species Brassica oleracea
Alias No gene alias
Pangenome status Dispensable (2/3)
Length 481aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 481 amino acids

>braol_pan_p040751_BRAOL
MSKEEFMKIQTCVLKVNIHCDGCKQKVKKILQKIEGVFTTKIDSDQGKVTVSGNVDPSVL
IKKLAKSGKHAEVWGAPKGNNNNQNQLANQMKGMQIDNGKGVGGKNNNNNNKGPKNGGGG
GGGGGGGGGNSNAPKMGQQLNPQQIQQLQQIQKMKGFQDLKLPPQLKDSKGAAPPPNKNQ
KGVKFDVPEDDDDDDDFTDDDEFDDEFTDDDDEFDDDEFGDLPPPSNKMKPNMMMPNAQQ
MMMNAQKNANLGGKGGPGGGNGGGGGGKGGPGGSGGGKGAPGGGGNQNQGGGKNGGKNGG
GGGGHPQDGKNGGGPNAGKKGNGGGGGGGGGGPMAGGLPAGFRPMGGGGPQNMSMPMGGP
MGMGGPMGNIPAVQGLPATGPGGGVPPGYFQGAGPDPMQMQQQQQQQQYLAAVMNQQRAM
GNERFQPMMYARPPPAVNYMPPHPPHQYPNPYPYPYPYPPHGNDQYSHVFSDENTSSCDI
M


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for braol_pan_p040751



Represented sequence(s):
BRAOL_TO1000
NC_027752.1_cds_XP_013587506.1_31166
NC_027752.1_cds_XP_013587507.1_31167
BRAOL_HDEM
BolC5p34771H
Unrepresented genome(s):
BRAOL_A2_v1.0
Download sequences FASTA

  1. 2. 3.
1. BolC5p34771H 0.00 -0.00 8.52
2. NC_027752.1_cds_XP_013587506.1_31166 -0.00 0.00 8.52
3. NC_027752.1_cds_XP_013587507.1_31167 8.52 8.52 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT3G06130.1 orthology 0.101 2 460 1.7e-159
MELO3C021404.2.1 orthology 0.527 4 - -
brana_pan_p046785 orthology 0.001 1 - -
cucsa_pan_p012169 orthology 0.495 4 218 5.85e-65