Gene brarr_pan_p004661


Sequence ID brarr_pan_p004661  add to my list
Species Brassica rapa subsp. rapa
Alias No gene alias
Pangenome status Core (2/2)
Length 153aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 153 amino acids

>brarr_pan_p004661_BRARR
MGVLDHVSEMFDCSHGHKIKKRRQLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVSLEP
KAHKVTVVGYVEPNKVVSRMAHRTGKKVELWPYVPYDVVAHPYASGVYDKKAPSGYVRRA
DDPGVSQLARASSTEVRYTTAFSDENPAACVVM



Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397
Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP463617 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for brarr_pan_p004661



Represented sequence(s):
BRARR_v3.0
BRARR_Z1



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT4G38580.1 orthology 0.0476 3 - -
brana_pan_p029669 orthology 0.0011 1 245 3.38e-85
braol_pan_p031467 orthology 0.0076 2 311 1.11e-110