Gene brarr_pan_p006678
| Sequence ID | brarr_pan_p006678 add to my list | ||
|---|---|---|---|
| Species | Brassica rapa subsp. rapa | ||
| Alias | No gene alias | ||
| Pangenome status | Core (2/2) | ||
| Length | 353aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 353 amino acids
>brarr_pan_p006678_BRARR MATEEMKPETKKTEQKQSPQVKDLTPPPLALPYKTCNLKVSIHCEGCKRKVKKILTSIEG VYRVDIDVKQNNVTVMGIVSPEILLKKLHKAGKNADLVPEIPDPVENKPHDPKENKPVDP KKKNKKKKEEKPEITDKDTSSGSDKPESEKPDGAGKCSSGDSSEACAPVKEDKCEILKKK DSAPADSSSPEDSPTESPAPTAEKKAEESSGSVGKKKKKKGQTMSSVNNPTGGPGRTRSL PSPNSTPAAEDHDRSNNQHDGHQMLPNSVAPRQDMYPYPPNYYAPQIMYGVSYNVAQPPV SVDAASYYSPAPPHSYAYMHPGYPPCDQNPYPSRPSDSFELFSDENPNGCSVM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP023608 | Unannotated cluster |
| 3 | GP040483 | Unannotated cluster |
| 4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for brarr_pan_p006678
Represented sequence(s):
BRARR_Z1
BRARR_v3.0
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| AT1G56210.1 | orthology | 0.296 | 2 | 352 | 1.51e-120 |
| Ca_18_40.10 | orthology | 1 | 5 | - | - |
| Ca_31_336.3 | orthology | 1 | 5 | - | - |
| Cc02_g33120 | orthology | 1 | 5 | 89.7 | 5e-20 |
| brana_pan_p003618 | orthology | 0.0208 | 1 | 627 | 4.69e-229 |
| maize_pan_p033245 | orthology | 1 | 4 | - | - |