Gene brarr_pan_p007939
| Sequence ID | brarr_pan_p007939 add to my list | ||
|---|---|---|---|
| Species | Brassica rapa subsp. rapa | ||
| Alias | No gene alias | ||
| Pangenome status | Core (2/2) | ||
| Length | 251aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 251 amino acids
>brarr_pan_p007939_BRARR MHCEGCAKKIHRCLKGFEGVEDVTTDCKNSKVVVKGEKADPLKVLQRLQRKSHRPVELLS PIPEPKPVSDEPEKKEEKPKPQEKKEEVVTVVLRVHMHCEACAMEIQKRIMRMKGVESVE PDFKASQVSVKGVFIPEKLVEYVNKKIGKHAAIVKQDPSPKPPEKEKETKDKDEKKREEE QYKESKEAKEDGGGVAKSAVGDGGAAAEGGDKVVDLKKNEYQYQPPRYPVEMFAYPPQIF SDENPNACTMM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | Heavy metal transport/detoxification group1
GP015545 |
Heavy metal transport/detoxification group1 |
| 3 | GP040674 | Unannotated cluster |
| 4 | GP070448 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for brarr_pan_p007939
Represented sequence(s):
BRARR_v3.0
BRARR_Z1
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| AT5G50740.3 | orthology | 0.108 | 2 | 294 | 1.14e-100 |
| MELO3C002372.2.1 | orthology | 0.475 | 4 | 246 | 3.29e-81 |
| brana_pan_p008102 | orthology | 0.0282 | 2 | 352 | 2.1e-123 |
| braol_pan_p032028 | orthology | 0.0281 | 2 | 352 | 2.88e-123 |
| cucsa_pan_p017723 | orthology | 0.476 | 4 | 262 | 1.4e-87 |