Gene brarr_pan_p011412
| Sequence ID | brarr_pan_p011412 add to my list | ||
|---|---|---|---|
| Species | Brassica rapa subsp. rapa | ||
| Alias | No gene alias | ||
| Pangenome status | Core (2/2) | ||
| Length | 236aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 236 amino acids
>brarr_pan_p011412_BRARR MEKSRMPRNVYEPLKTYFLKVNINCHGCNRKVKKTLRKVEGVYSVDIDTDQQAVIVRGNL DPEILVTKLNRRGKYAELLFMSPFHGNHHDNRSLRNAPYNFGNNHFNNVPSYERQSDGEM MKMMMANNMKPVMMNEADYFQMSDSSEDFQELFGETAQRHNYDEEVHPNLMRDMDLGYSN AYPAAETMNMHIPGRSNNTMMNERSFHGQMMNGPSLVPQFMNQEQFSARQLNGFYY
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP023608 | Unannotated cluster |
| 3 | GP040483 | Unannotated cluster |
| 4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for brarr_pan_p011412
Represented sequence(s):
BRARR_v3.0
BRARR_Z1
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| AT5G37860.1 | orthology | 0.158 | 3 | 329 | 5.28e-115 |
| AUR62023201-RA | orthology | 1 | 5 | - | - |
| Bv2_027590_uyzx.t1 | orthology | 1 | 5 | - | - |
| brana_pan_p040071 | orthology | 0.0228 | 1 | 462 | 1.35e-167 |
| braol_pan_p024136 | orthology | 0.0201 | 2 | 464 | 1.49e-168 |