Gene brarr_pan_p013848
| Sequence ID | brarr_pan_p013848 add to my list | ||
|---|---|---|---|
| Species | Brassica rapa subsp. rapa | ||
| Alias | No gene alias | ||
| Pangenome status | Core (2/2) | ||
| Length | 265aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 265 amino acids
>brarr_pan_p013848_BRARR MRISDIFCSSPASTAVRRSTLPHDGEITGGRRSVDSLRRSQNHNNNRDKTAPCFASEMPF IPIPRPVMSCRNSFESSRGRKITTAHGGEVQTRRKSSADVSDVLRRTRSSLQGSSSSRYL LKDHKSYKEDDKDLWLSSSDRSKDLIPFRDRNVTISSSSTSSSSSSSVTNGSSPSPSTDD DQVVVLRVSIHCKGCEGKVRKHISKMEGVTSYTIDIATKKVTVVGKVTPSGVVESISKVK FAQLWPSSSSPSFPHVPNHSPLIKS
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP015837 | Unannotated cluster |
| 3 | GP040905 | Unannotated cluster |
| 4 | GP070656 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
|
SODIUM POTASSIUM ROOT DEFECTIVE 2/3
IPR016578
|
SODIUM POTASSIUM ROOT DEFECTIVE 2/3 | Family |
Figure 1: IPR domains for brarr_pan_p013848
Represented sequence(s):
BRARR_Z1
BRARR_v3.0
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| AT2G28660.1 | orthology | 0.156 | 3 | 329 | 1.79e-114 |
| brana_pan_p001233 | orthology | 0.0132 | 1 | 451 | 2.82e-162 |
| braol_pan_p037483 | orthology | 0.0167 | 2 | 445 | 4.93e-160 |