Gene brarr_pan_p020733
Sequence ID | brarr_pan_p020733 add to my list | ||
---|---|---|---|
Species | Brassica rapa subsp. rapa | ||
Alias | No gene alias | ||
Pangenome status | Core (2/2) | ||
Length | 235aa | ||
Gene Ontology |
Display term(s) (1)
|
Length: 235 amino acids
>brarr_pan_p020733_BRARR MSKNNNKRDGSGEKKTASITVVLKVDMHCDGCASKLVKSVRAIQGVETVKAESETGKVTV TGDVDPAKLREQLEVKIKKKVELVSPQPNKEKDNNKDSKDKNKEKKSKEKKPKEAPVTTA VLKVDFHRERCIEKIQKTVSKTKGVSGFSIDHEKQLVTVKGTMDVKKLVRSLTEKLKRSV EIVATAKNGNAKEKQYVAAQPAHGSAYFPGEDGDTIEYLAPQIFSDDNPNACVVM
Multiple alignment used to build consensus sequence:
Clustering Level | Family ID | Family Name |
---|---|---|
1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
2 | Heavy metal transport/detoxification group1
GP015545 |
Heavy metal transport/detoxification group1 |
3 | GP040674 | Unannotated cluster |
4 | GP071484 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
ID | Name | Type |
---|---|---|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for brarr_pan_p020733
Represented sequence(s):
BRARR_Z1
BRARR_v3.0
Homology | RBH | ||||
---|---|---|---|---|---|
Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
AT5G60800.2 | orthology | 0.44 | 2 | - | - |
braol_pan_p002717 | orthology | 0.0362 | 1 | 356 | 6.14e-126 |
brarr_pan_p008731 | ultra-paralogy | 0.001 | 0 | - | - |
cajca.ICPL87119.gnm1.ann1.C.cajan_21570.1 | orthology | 1 | 5 | - | - |
cajca.ICPL87119.gnm1.ann1.C.cajan_25550.1 | orthology | 1 | 3 | - | - |
cicar_pan_p020480 | orthology | 1 | 4 | - | - |
cicar_pan_p021432 | orthology | 1 | 4 | - | - |
medtr_pan_p011734 | orthology | 1 | 4 | - | - |
medtr_pan_p013059 | orthology | 1 | 4 | - | - |
phavu.G19833.gnm2.ann1.Phvul.005G131500.1 | orthology | 1 | 4 | - | - |
phavu.G19833.gnm2.ann1.Phvul.011G084200.1 | orthology | 1 | 4 | - | - |
soybn_pan_p003591 | orthology | 1 | 4 | - | - |
soybn_pan_p023786 | orthology | 1 | 5 | - | - |
soybn_pan_p027875 | orthology | 1 | 5 | - | - |
soybn_pan_p029836 | orthology | 1 | 5 | - | - |