Gene capan_pan_p000483


Sequence ID capan_pan_p000483  add to my list
Species Capsicum annuum
Alias No gene alias
Pangenome status Core (3/3)
Length 150aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 150 amino acids

>capan_pan_p000483_CAPAN
MGVSGTLEYLSEVLSSVKKSKKKKQIATVAIKIRMDCEGCARKVKNVLSGVKGAKSVDVD
LKQQKATVTGFVEPKKVLKAAQSTGKKCEIWPYVPYSMVAHPYAAGVYDKKAPPNFVRAT
TDPTVAHLDPVEEQYSLMFSDENPNACNIM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP463617 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for capan_pan_p000483



Represented sequence(s):
CAPAN_Zunla_1_v2.0
Capana04g001132
CAPAN_Glabriusculum_Chiltepin_v2.0
Capang04g001067
CAPAN_CM334_v2.0
CA.PGAv.1.6.scaffold517.24
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Ca_51_149.3 orthology 0.368 5 220 1.25e-74
Ca_54_61.7 orthology 0.381 4 - -
Cc00_g30010 orthology 0.368 5 220 4.21e-75
Oeu024561.1 orthology 0.309 3 239 2.54e-82
Oeu061475.1 orthology 0.341 3 - -
PGSC0003DMP400016735 orthology 0.0555 2 - -
PGSC0003DMP400016737 orthology 0.0487 2 285 6.46e-101
Solyc04g072700.2.1 orthology 0.0481 2 285 6.43e-101
ipotf_pan_p013731 orthology 0.208 3 251 3.54e-87
itb06g23970.t1 orthology 0.202 3 252 1.34e-87