Gene capan_pan_p000900


Sequence ID capan_pan_p000900  add to my list
Species Capsicum annuum
Alias No gene alias
Pangenome status Dispensable (2/3)
Length 147aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 147 amino acids

>capan_pan_p000900_CAPAN
MGVLEYIANFCTITTSTNNKKKSMQTVEIKVKMDCDGCERRVKNSVKHMKGVKSVEVIRK
QSKVIVNGYVDPNRVLKRIKSTGKRAEFWPYVPYNVVYYPHAPQAYDKRAPAGMVKNVPQ
ALLAPNATEEKFAYLFSDDNPSACSIM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP463678 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for capan_pan_p000900



Represented sequence(s):
CAPAN_Zunla_1_v2.0
Capana04g002139
CAPAN_CM334_v2.0
CA.PGAv.1.6.scaffold3888.1
CA.PGAv.1.6.scaffold11.13
Unrepresented genome(s):
CAPAN_Glabriusculum_Chiltepin_v2.0
Download sequences FASTA

  1. 2. 3.
1. CA.PGAv.1.6.scaffold11.13 0.00 10.79 10.79
2. CA.PGAv.1.6.scaffold3888.1 10.79 0.00 -0.00
3. Capana04g002139 10.79 -0.00 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Oeu007436.2 orthology 0.476 3 - -
Oeu054755.1 orthology 0.462 3 - -
PGSC0003DMP400029185 orthology 0.142 2 246 3.78e-85
Solyc03g043640.2.1 orthology 0.0305 2 293 4.57e-104
ipotf_pan_p014279 orthology 0.366 3 231 1.11e-79
itb03g08540.t1 orthology 0.366 3 231 1.2e-79