Gene capan_pan_p004624


Sequence ID capan_pan_p004624  add to my list
Species Capsicum annuum
Alias No gene alias
Pangenome status Core (3/3)
Length 99aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 99 amino acids

>capan_pan_p004624_CAPAN
MSCQGCVGAVNRVLGKMEGVESFDIDIKEQKVTVKGNVEPEAVFQTVSKTGKKTSFWEEA
APAPAEPEAKPVEEKPAETPTDPEPKPAEEKPAETVAAA


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP239638 Unannotated cluster
3 GP341755 Unannotated cluster
4 GP463817 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for capan_pan_p004624



Represented sequence(s):
CAPAN_Zunla_1_v2.0
Capana12g002257
CAPAN_CM334_v2.0
CA.PGAv.1.6.scaffold730.44
CAPAN_Glabriusculum_Chiltepin_v2.0
Capang12g001938
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Ca_453_87.10 orthology 0.231 3 122 4.38e-37
Cc00_g29460 orthology 0.257 3 - -
Cc02_g09880 orthology 0.197 2 122 5.59e-38
PGSC0003DMP400033854 orthology 0.137 2 130 3.71e-41
Solyc11g007200.1.1 orthology 0.138 2 133 3.92e-42