Gene capan_pan_p011898


Sequence ID capan_pan_p011898  add to my list
Species Capsicum annuum
Alias No gene alias
Pangenome status Dispensable (2/3)
Length 147aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 147 amino acids

>capan_pan_p011898_CAPAN
MGIIDHISNMCEVTSTRKSKRKPLQTVEIKVKMDCDGCERRVTNAVSSMKGVKSVDVSRK
QSRVTVSGYVEPKKVLKKVQNTGKKAEYWPYVEYNLVSYPYAPGAYDKKAPSGYVRAVPQ
AFQIPNTPTEKFTSMFSDENPNACEIM



Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397
Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP463678 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for capan_pan_p011898



Represented sequence(s):
CAPAN_Glabriusculum_Chiltepin_v2.0
CAPAN_Zunla_1_v2.0
Unrepresented genome(s):
CAPAN_CM334_v2.0



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AUR62014197-RA orthology 0.49 4 - -
AUR62024872-RA orthology 0.66 5 - -
AUR62030676-RA orthology 0.631 5 - -
Bv2_043150_njdu.t1 orthology 0.589 4 - -
Bv6_142690_rfcx.t1 orthology 0.847 5 - -
Ca_9_830.1 orthology 0.528 7 - -
Cc11_g08870 orthology 0.528 7 - -
DCAR_007285 orthology 0.475 7 226 1.04e-77
DCAR_023613 orthology 0.52 7 - -
DCAR_026769 orthology 0.49 7 - -
HanXRQChr08g0212651 orthology 0.474 5 240 5.16e-83
Oeu036720.1 orthology 0.345 3 - -
Oeu044351.1 orthology 0.328 3 - -
PGSC0003DMP400010633 orthology 0.134 2 - -
Solyc04g007630.1.1 orthology 0.127 2 - -
capan_pan_p025493 ultra-paralogy 0.0598 0 - -
capan_pan_p030603 ultra-paralogy 0.0105 0 - -
ipotf_pan_p001332 orthology 0.489 3 - -
ipotf_pan_p026205 orthology 0.494 3 - -
ipotf_pan_p028506 orthology 0.35 3 - -
itb04g14310.t1 orthology 0.467 3 - -
itb07g07120.t1 orthology 0.343 3 - -
itb14g01060.t2 orthology 0.494 3 - -