Gene capan_pan_p012222


Sequence ID capan_pan_p012222  add to my list
Species Capsicum annuum
Alias No gene alias
Pangenome status Core (3/3)
Length 434aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 434 amino acids

>capan_pan_p012222_CAPAN
QTCVLKVNIHCDGCKQKVKKKLQKIEGVYTVKIDVDQSKVTVTGNVDPATLIKKLVKSGK
HAQLWGGGQKGGSNVNMMNNEFMNMKGGKDNKSQKGGGGGGGGGGNKEQPKFLQMMQNLK
GGSKDNFKMPNVPNSKDQKSVKFNLPEDDFDDDFDDDDDFDDEDEFDDESDDEFDDHPPS
KMMPAMGGGGGHGSHGLNAMMMNLKGGAMGNNGGNGKKGGGGVEIPVQMKGMDGKNNNGG
KQGKGGNQNQGGGKNGGKNGGGGGLPDGKNGKGNNNGSFGGKNNDNWGAAQKGGGGKMDG
GLMMNSMQQGGPHGMMSMGQKGGGPMSMGQMGGHPMGHMGNMQAAQGLPAGGGGYPGMAM
GQGGNPYSQQQQQYMAQMMMNQQRPAGYDMYGAHPMMYARPHPAVSYGPPMGAPVHDNFT
HMFSDENTGSCSIM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for capan_pan_p012222



Represented sequence(s):
CAPAN_Zunla_1_v2.0
Capana00g000839
CAPAN_Glabriusculum_Chiltepin_v2.0
Capang00g000712
CAPAN_CM334_v2.0
CA.PGAv.1.6.scaffold1132.7
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Ca_43_818.1 orthology 0.576 3 201 1.73e-59
Cc00_g13310 orthology 0.578 3 229 1.07e-70
ipotf_pan_p011347 orthology 0.477 2 - -
itb15g11860.t2 orthology 0.477 2 247 3.11e-77